Tuesday 7 July 2015

Pulling sections out of FastQC output file

This is fairly straightforward.  The output file generated by FastQC puts dividers in the data already.  They look like the following:
>>Basic Statistics
>>END_MODULE

This is useful for if we want to separate the data.  You can do so with the following script.
https://github.com/agduncan94/BioinformaticTools/blob/master/grabFastQCOutput.pl


I'm sure there are better ways, but if you just want to do it quickly then this will work.

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